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ptar1 protein prenyltransferase alpha subunit repeat containing 1 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108878261, updated on 1-Aug-2024

Summary

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Gene symbol
ptar1
Gene description
protein prenyltransferase alpha subunit repeat containing 1
See related
EnsemblRapid:ENSLCAG00010023903
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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See ptar1 in Genome Data Viewer
Location:
chromosome: LG13
Exon count:
7
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG13 NC_066845.1 (23284171..23294499, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017367222.1 (840589..850214)

Linkage Group LG13 - NC_066845.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 189 member A2 Neighboring gene amyloid beta (A4) precursor protein-binding, family A, member 1a Neighboring gene uncharacterized LOC108878260 Neighboring gene nuclear factor 7, brain-like Neighboring gene dynein regulatory complex subunit 4 Neighboring gene nuclear factor 7, brain-like Neighboring gene nuclear factor 7, brain

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein prenyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein prenylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein prenyltransferase alpha subunit repeat-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066845.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    23284171..23294499 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018668765.2 → XP_018524281.1  protein prenyltransferase alpha subunit repeat-containing protein 1

    UniProtKB/TrEMBL
    A0A4W6FJW2, A0AAJ7LKJ3
    Related
    ENSLCAP00010051324.1, ENSLCAT00010052662.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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