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hikeshi heat shock protein nuclear import factor hikeshi [ Lates calcarifer (barramundi perch) ]

Gene ID: 108873350, updated on 14-Mar-2024

Summary

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Gene symbol
hikeshi
Gene description
heat shock protein nuclear import factor hikeshi
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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See hikeshi in Genome Data Viewer
Location:
chromosome: LG19
Exon count:
1
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG19 NC_066851.1 (24483933..24485383, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017366561.1 (39450..40981)

Linkage Group LG19 - NC_066851.1Genomic Context describing neighboring genes Neighboring gene zinc-binding protein A33-like Neighboring gene dehydrogenase/reductase SDR family member 13-like Neighboring gene retinol dehydrogenase 11-like Neighboring gene HEAT repeat containing 5a Neighboring gene HECT domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Hsp70 protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear import signal receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein import into nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein Hikeshi
Names
Hikeshi, heat shock protein nuclear import factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066851.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    24483933..24485383 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018661510.2 → XP_018517026.1  protein Hikeshi

    UniProtKB/TrEMBL
    A0A4W6DFA1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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