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pde10a phosphodiesterase 10A [ Lates calcarifer (barramundi perch) ]

Gene ID: 108872431, updated on 18-Sep-2024

Summary

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Gene symbol
pde10a
Gene description
phosphodiesterase 10A
See related
EnsemblRapid:ENSLCAG00010016126
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG16_LG22
Exon count:
24
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG16_LG22 NC_066848.1 (4963348..5016042, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017366483.1 (138816..193960, complement)

Linkage Group LG16_LG22 - NC_066848.1Genomic Context describing neighboring genes Neighboring gene phospholipase A2, group XIIB Neighboring gene uncharacterized protein C6orf118 Neighboring gene uncharacterized si:ch211-130h14.4 Neighboring gene T-box transcription factor Tb Neighboring gene proline rich 18

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3',5'-cGMP-stimulated cyclic-nucleotide phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of cGMP-mediated signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066848.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    4963348..5016042 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018660097.2 → XP_018515613.1  cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A isoform X1

    UniProtKB/TrEMBL
    A0A4W6ECW1, A0AAJ7PB70
    Related
    ENSLCAP00010035054.2, ENSLCAT00010035873.2

  2. XM_018660096.2 → XP_018515612.1  cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A isoform X1

    UniProtKB/TrEMBL
    A0A4W6ECW1, A0AAJ7PB70
    Related
    ENSLCAP00010035118.2, ENSLCAT00010035937.2

  3. XM_018660100.2 → XP_018515616.1  cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A isoform X2

    UniProtKB/TrEMBL
    A0A4W6ECV1, A0A4W6ECW1
    Related
    ENSLCAP00010035044.1, ENSLCAT00010035863.2

  4. XM_018660102.2 → XP_018515618.1  cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A isoform X3

    UniProtKB/TrEMBL
    A0A4W6EBW3, A0AAJ7L833
    Related
    ENSLCAP00010035095.2, ENSLCAT00010035914.2

  5. XM_018660103.2 → XP_018515619.1  cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A isoform X4

    UniProtKB/TrEMBL
    A0A4W6EAF1, A0A4W6EBW3
    Related
    ENSLCAP00010035040.1, ENSLCAT00010035859.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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