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SMOC2 SPARC related modular calcium binding 2 [ Lepidothrix coronata (blue-crowned manakin) ]

Gene ID: 108498647, updated on 3-Aug-2024

Summary

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Gene symbol
SMOC2
Gene description
SPARC related modular calcium binding 2
See related
Ensembl:ENSLCOG00000006675
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepidothrix coronata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Pipridae; Lepidothrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current Lepidothrix_coronata-1.0 (GCF_001604755.1) Unplaced Scaffold NW_016690241.1 (463135..602277)

NW_016690241.1Genomic Context describing neighboring genes Neighboring gene sulfotransferase 6B1-like Neighboring gene sulfotransferase 6B1-like Neighboring gene thrombospondin 2 Neighboring gene uncharacterized LOC108498586

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_016690241.1 Unplaced Scaffold Reference Lepidothrix_coronata-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables extracellular matrix binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables heparin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SPARC-related modular calcium-binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepidothrix coronata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lepidothrix_coronata-1.0

Genomic

  1. NW_016690241.1 Reference Lepidothrix_coronata-1.0

    Range
    463135..602277
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017817597.1 → XP_017673086.1  SPARC-related modular calcium-binding protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A6J0HGH3

  2. XM_017817599.1 → XP_017673088.1  SPARC-related modular calcium-binding protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A6J0HER8
    Conserved Domains (4) summary
    cd00104
    Location:51 → 82
    KAZAL_FS; Kazal type serine protease inhibitors and follistatin-like domains. Kazal inhibitors inhibit serine proteases, such as, trypsin, chyomotrypsin, avian ovomucoids, and elastases. The inhibitory domain has one reactive site peptide bond, which serves the ...
    cd16241
    Location:313 → 426
    EFh_SPARC_SMOC2; EF-hand, extracellular calcium-binding (EC) motif, found in secreted modular calcium-binding protein 2 (SMOC-2)
    pfam00086
    Location:225 → 290
    Thyroglobulin_1; Thyroglobulin type-1 repeat
    pfam16597
    Location:152 → 223
    Thyroglob_assoc; Thyroglobulin_1 repeat associated disordered domain

  3. XM_017817600.1 → XP_017673089.1  SPARC-related modular calcium-binding protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A6J0HHM2
    Conserved Domains (4) summary
    cd00104
    Location:51 → 82
    KAZAL_FS; Kazal type serine protease inhibitors and follistatin-like domains. Kazal inhibitors inhibit serine proteases, such as, trypsin, chyomotrypsin, avian ovomucoids, and elastases. The inhibitory domain has one reactive site peptide bond, which serves the ...
    cd16241
    Location:313 → 426
    EFh_SPARC_SMOC2; EF-hand, extracellular calcium-binding (EC) motif, found in secreted modular calcium-binding protein 2 (SMOC-2)
    pfam00086
    Location:225 → 290
    Thyroglobulin_1; Thyroglobulin type-1 repeat
    pfam16597
    Location:152 → 223
    Thyroglob_assoc; Thyroglobulin_1 repeat associated disordered domain

  4. XM_017817598.1 → XP_017673087.1  SPARC-related modular calcium-binding protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A6J0HF47

  5. XM_017817601.1 → XP_017673090.1  SPARC-related modular calcium-binding protein 2 isoform X5

    UniProtKB/TrEMBL
    A0A6J0HGC2
    Related
    ENSLCOP00000009123.1, ENSLCOT00000009702.1
    Conserved Domains (5) summary
    cd00104
    Location:51 → 82
    KAZAL_FS; Kazal type serine protease inhibitors and follistatin-like domains. Kazal inhibitors inhibit serine proteases, such as, trypsin, chyomotrypsin, avian ovomucoids, and elastases. The inhibitory domain has one reactive site peptide bond, which serves the ...
    cd00191
    Location:213 → 279
    TY; Thyroglobulin type I repeats.; The N-terminal region of human thyroglobulin contains 11 type-1 repeats TY repeats are proposed to be inhibitors of cysteine proteases
    cd16241
    Location:302 → 415
    EFh_SPARC_SMOC2; EF-hand, extracellular calcium-binding (EC) motif, found in secreted modular calcium-binding protein 2 (SMOC-2)
    pfam00086
    Location:88 → 151
    Thyroglobulin_1; Thyroglobulin type-1 repeat
    pfam16597
    Location:152 → 212
    Thyroglob_assoc; Thyroglobulin_1 repeat associated disordered domain
Nucleotide Protein
Heading Accession and Version

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