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ALX1 ALX homeobox 1 [ Lepidothrix coronata (blue-crowned manakin) ]

Gene ID: 108492219, updated on 3-Aug-2024

Summary

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Gene symbol
ALX1
Gene description
ALX homeobox 1
See related
Ensembl:ENSLCOG00000008057
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepidothrix coronata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Pipridae; Lepidothrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Lepidothrix_coronata-1.0 (GCF_001604755.1) Unplaced Scaffold NW_016690189.1 (4572853..4591367)

NW_016690189.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 6 member 15 Neighboring gene leucine rich repeats and IQ motif containing 1 Neighboring gene uncharacterized LOC108492221 Neighboring gene uncharacterized LOC108492222 Neighboring gene Ras association domain family member 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_016690189.1 Unplaced Scaffold Reference Lepidothrix_coronata-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in embryonic skeletal system morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ALX homeobox protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepidothrix coronata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lepidothrix_coronata-1.0

Genomic

  1. NW_016690189.1 Reference Lepidothrix_coronata-1.0

    Range
    4572853..4591367
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017804276.1 → XP_017659765.1  ALX homeobox protein 1

    UniProtKB/TrEMBL
    A0A6J0GD08
    Related
    ENSLCOP00000011112.1, ENSLCOT00000011774.1
    Conserved Domains (2) summary
    pfam00046
    Location:136 → 190
    Homeobox; Homeobox domain
    pfam03826
    Location:303 → 321
    OAR; OAR domain
Nucleotide Protein
Heading Accession and Version

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