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wu:fj13e08 putative zinc finger protein 66 [ Pygocentrus nattereri (red-bellied piranha) ]

Gene ID: 108442296, updated on 14-Mar-2024

Summary

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Gene symbol
wu:fj13e08
Gene description
putative zinc finger protein 66
Gene type
protein coding
RefSeq status
MODEL
Organism
Pygocentrus nattereri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Pygocentrus
Also known as
znf485
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
101 current fPygNat1.pri (GCF_015220715.1) 5 NC_051215.1 (37936185..37938042)
100 previous assembly Pygocentrus_nattereri-1.0.2 (GCF_001682695.1) Unplaced Scaffold NW_016243765.1 (2654785..2656630, complement)

Chromosome 5 - NC_051215.1Genomic Context describing neighboring genes Neighboring gene Ras association domain family member 4a Neighboring gene C-X-C motif chemokine 11 Neighboring gene polyamine oxidase Neighboring gene zinc finger, CCHC domain containing 24 Neighboring gene peptidylprolyl isomerase Fa

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative zinc finger protein 66
Names
zinc finger protein 485

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pygocentrus nattereri Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPygNat1.pri

Genomic

  1. NC_051215.1 Reference fPygNat1.pri

    Range
    37936185..37938042
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017722276.2 → XP_017577765.2  putative zinc finger protein 66

    Conserved Domains (2) summary
    COG5048
    Location:191 → 322
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:244 → 264
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
Heading Accession and Version

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