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traf6 TNF receptor-associated factor 6 [ Pygocentrus nattereri (red-bellied piranha) ]

Gene ID: 108438541, updated on 18-Jun-2024

Summary

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Gene symbol
traf6
Gene description
TNF receptor-associated factor 6
See related
Ensembl:ENSPNAG00000016363
Gene type
protein coding
RefSeq status
MODEL
Organism
Pygocentrus nattereri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Pygocentrus
Orthologs
human zebrafish all
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Genomic context

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See traf6 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
10
Annotation release Status Assembly Chr Location
101 current fPygNat1.pri (GCF_015220715.1) 25 NC_051235.1 (24116307..24127269, complement)
100 previous assembly Pygocentrus_nattereri-1.0.2 (GCF_001682695.1) Unplaced Scaffold NW_016244029.1 (720313..728279, complement)

Chromosome 25 - NC_051235.1Genomic Context describing neighboring genes Neighboring gene cyclin dependent kinase inhibitor 1Ca Neighboring gene uncharacterized LOC119262444 Neighboring gene transient receptor potential cation channel, subfamily M, member 5 Neighboring gene proline-rich protein 5-like Neighboring gene aggrecan a Neighboring gene hyaluronan and proteoglycan link protein 3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tumor necrosis factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in interleukin-1-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of JNK cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of NF-kappaB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K63-linked ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tumor necrosis factor-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of plasma membrane signaling receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TNF receptor-associated factor 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pygocentrus nattereri Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPygNat1.pri

Genomic

  1. NC_051235.1 Reference fPygNat1.pri

    Range
    24116307..24127269 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017716422.2 → XP_017571911.1  TNF receptor-associated factor 6 isoform X2

    UniProtKB/TrEMBL
    A0A3B4CH23

  2. XM_037534492.1 → XP_037390389.1  TNF receptor-associated factor 6 isoform X1

    Conserved Domains (4) summary
    cd03776
    Location:397 → 543
    MATH_TRAF6; Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter ...
    cd16643
    Location:89 → 146
    mRING-HC-C3HC3D_TRAF6; Modified RING finger, HC subclass (C3HC3D-type), found in tumor necrosis factor (TNF) receptor-associated factor 6 (TRAF6) and similar proteins
    cl23720
    Location:335 → 405
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
    cl40617
    Location:226 → 283
    zf-TRAF; TRAF-type zinc finger

  3. XM_017716423.2 → XP_017571912.1  TNF receptor-associated factor 6 isoform X2

    UniProtKB/TrEMBL
    A0A3B4CH23
    Related
    ENSPNAP00000010758.1, ENSPNAT00000017516.2

RNA

  1. XR_005129632.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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