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LOC108436840 synaptopodin [ Pygocentrus nattereri (red-bellied piranha) ]

Gene ID: 108436840, updated on 18-Jun-2024

Summary

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Gene symbol
LOC108436840
Gene description
synaptopodin
See related
Ensembl:ENSPNAG00000019549
Gene type
protein coding
RefSeq status
MODEL
Organism
Pygocentrus nattereri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Pygocentrus
Also known as
synpo
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 11
Exon count:
4
Annotation release Status Assembly Chr Location
101 current fPygNat1.pri (GCF_015220715.1) 11 NC_051221.1 (8208597..8248337, complement)
100 previous assembly Pygocentrus_nattereri-1.0.2 (GCF_001682695.1) Unplaced Scaffold NW_016243973.1 (101786..135982)

Chromosome 11 - NC_051221.1Genomic Context describing neighboring genes Neighboring gene melanin concentrating hormone receptor 2b Neighboring gene tetraspanin 17 Neighboring gene uncharacterized LOC108436841 Neighboring gene dynactin 4 Neighboring gene glutathione peroxidase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of actin filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptopodin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pygocentrus nattereri Annotation Release 101

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPygNat1.pri

Genomic

  1. NC_051221.1 Reference fPygNat1.pri

    Range
    8208597..8248337 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017713549.2 → XP_017569038.1  synaptopodin

    UniProtKB/TrEMBL
    A0A3B4CT27
    Related
    ENSPNAP00000013684.2, ENSPNAT00000021352.2
Nucleotide Protein
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Gene LinkOut

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