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hmgb3a high mobility group box 3a [ Pygocentrus nattereri (red-bellied piranha) ]

Gene ID: 108434649, updated on 18-Jun-2024

Summary

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Gene symbol
hmgb3a
Gene description
high mobility group box 3a
See related
Ensembl:ENSPNAG00000018667
Gene type
protein coding
RefSeq status
MODEL
Organism
Pygocentrus nattereri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Pygocentrus
Also known as
hmgb3
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
101 current fPygNat1.pri (GCF_015220715.1) 2 NC_051212.1 (27875592..27881838)
100 previous assembly Pygocentrus_nattereri-1.0.2 (GCF_001682695.1) Unplaced Scaffold NW_016243917.1 (1583080..1589250)

Chromosome 2 - NC_051212.1Genomic Context describing neighboring genes Neighboring gene myotubularin related protein 1a Neighboring gene CD99 molecule-like 2 Neighboring gene arrestin, beta 2b Neighboring gene proline, glutamate and leucine rich protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding, bending IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
high mobility group protein B3a
Names
high mobility group box 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pygocentrus nattereri Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPygNat1.pri

Genomic

  1. NC_051212.1 Reference fPygNat1.pri

    Range
    27875592..27881838
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017709960.2 → XP_017565449.2  high mobility group protein B3a isoform X1

    UniProtKB/TrEMBL
    A0A3B4CLF2
    Related
    ENSPNAP00000012857.1, ENSPNAT00000020262.2
    Conserved Domains (2) summary
    pfam00505
    Location:166 → 233
    HMG_box; HMG (high mobility group) box
    pfam09011
    Location:81 → 153
    HMG_box_2; HMG-box domain

  2. XM_017709961.2 → XP_017565450.1  high mobility group protein B3a isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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