U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

pde1ca phosphodiesterase 1C, calmodulin-dependent a [ Pygocentrus nattereri (red-bellied piranha) ]

Gene ID: 108428953, updated on 14-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
pde1ca
Gene description
phosphodiesterase 1C, calmodulin-dependent a
See related
EnsemblRapid:ENSPNAG00000023833
Gene type
protein coding
RefSeq status
MODEL
Organism
Pygocentrus nattereri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Pygocentrus
Also known as
pde1c
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 3
Exon count:
22
Annotation release Status Assembly Chr Location
101 current fPygNat1.pri (GCF_015220715.1) 3 NC_051213.1 (20997889..21135246)
100 previous assembly Pygocentrus_nattereri-1.0.2 (GCF_001682695.1) Unplaced Scaffold NW_016243822.1 (254784..373936, complement)

Chromosome 3 - NC_051213.1Genomic Context describing neighboring genes Neighboring gene tRNA aspartic acid methyltransferase 1 Neighboring gene vimentin Neighboring gene protein phosphatase 1 regulatory subunit 17 Neighboring gene ITPR interacting domain containing 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3',5'-cyclic-nucleotide phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Pygocentrus nattereri Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPygNat1.pri

Genomic

  1. NC_051213.1 Reference fPygNat1.pri

    Range
    20997889..21135246
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037537035.1 → XP_037392932.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X2

    Conserved Domains (3) summary
    pfam00233
    Location:358 → 586
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:217 → 273
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
    NF033598
    Location:674 → 774
    elast_bind_EbpS; elastin-binding protein EbpS

  2. XM_037537034.1 → XP_037392931.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X1

    Conserved Domains (3) summary
    pfam00233
    Location:358 → 586
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:217 → 273
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
    NF033598
    Location:674 → 774
    elast_bind_EbpS; elastin-binding protein EbpS

  3. XM_037537036.1 → XP_037392933.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X3

    Conserved Domains (2) summary
    pfam00233
    Location:358 → 586
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:217 → 273
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

  4. XM_037537038.1 → XP_037392935.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X7

    Related
    ENSPNAP00000070921.1, ENSPNAT00000076435.1
    Conserved Domains (3) summary
    pfam00233
    Location:285 → 513
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:144 → 200
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
    NF033598
    Location:601 → 701
    elast_bind_EbpS; elastin-binding protein EbpS

  5. XM_017700348.2 → XP_017555837.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X4

    UniProtKB/TrEMBL
    A0A3B4CZN0

  6. XM_037537037.1 → XP_037392934.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X5

    UniProtKB/TrEMBL
    A0A3B4CZN0
    Conserved Domains (3) summary
    pfam00233
    Location:265 → 493
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:124 → 180
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
    NF033598
    Location:581 → 681
    elast_bind_EbpS; elastin-binding protein EbpS

  7. XM_017700351.2 → XP_017555840.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X6

    UniProtKB/TrEMBL
    A0A3B4CZN0
    Related
    ENSPNAP00000059353.1, ENSPNAT00000051416.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.