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RIF1 replication timing regulatory factor 1 [ Manis javanica (Malayan pangolin) ]

Gene ID: 108409071, updated on 14-Mar-2024

Summary

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Gene symbol
RIF1
Gene description
replication timing regulatory factor 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Manis javanica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Pholidota; Manidae; Manis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
37
Annotation release Status Assembly Chr Location
101 current YNU_ManJav_2.0 (GCF_014570535.1) Unplaced Scaffold NW_023436168.1 (2462398..2528530)
100 previous assembly ManJav1.0 (GCF_001685135.1) Unplaced Scaffold NW_016546152.1 (115543..178401, complement)

NW_023436168.1Genomic Context describing neighboring genes Neighboring gene N-myc and STAT interactor Neighboring gene TNF alpha induced protein 6 Neighboring gene nebulin Neighboring gene ADP ribosylation factor like GTPase 5A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in telomere maintenance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
telomere-associated protein RIF1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manis javanica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference YNU_ManJav_2.0 Primary Assembly

Genomic

  1. NW_023436168.1 Reference YNU_ManJav_2.0 Primary Assembly

    Range
    2462398..2528530
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036995888.1 → XP_036851783.1  telomere-associated protein RIF1 isoform X5

    Conserved Domains (3) summary
    PTZ00233
    Location:1497 → 1669
    PTZ00233; variable surface protein Vir18; Provisional
    cd14267
    Location:2289 → 2336
    Rif1_CTD_C-II_like; Saccharomyces cerevisiae Rap1-interacting factor 1 CTD domain, metazoan Rif1 C-II domains and related domains
    pfam12231
    Location:29 → 361
    Rif1_N; Rap1-interacting factor 1 N terminal

  2. XM_036995890.1 → XP_036851785.1  telomere-associated protein RIF1 isoform X7

    Conserved Domains (3) summary
    PTZ00233
    Location:1456 → 1628
    PTZ00233; variable surface protein Vir18; Provisional
    cd14267
    Location:2274 → 2321
    Rif1_CTD_C-II_like; Saccharomyces cerevisiae Rap1-interacting factor 1 CTD domain, metazoan Rif1 C-II domains and related domains
    pfam12231
    Location:29 → 361
    Rif1_N; Rap1-interacting factor 1 N terminal

  3. XM_036995889.1 → XP_036851784.1  telomere-associated protein RIF1 isoform X6

    Conserved Domains (3) summary
    PTZ00233
    Location:1470 → 1642
    PTZ00233; variable surface protein Vir18; Provisional
    cd14267
    Location:2288 → 2335
    Rif1_CTD_C-II_like; Saccharomyces cerevisiae Rap1-interacting factor 1 CTD domain, metazoan Rif1 C-II domains and related domains
    pfam12231
    Location:29 → 361
    Rif1_N; Rap1-interacting factor 1 N terminal

  4. XM_036995891.1 → XP_036851786.1  telomere-associated protein RIF1 isoform X8

    Conserved Domains (3) summary
    PTZ00233
    Location:1496 → 1668
    PTZ00233; variable surface protein Vir18; Provisional
    cd14267
    Location:2288 → 2335
    Rif1_CTD_C-II_like; Saccharomyces cerevisiae Rap1-interacting factor 1 CTD domain, metazoan Rif1 C-II domains and related domains
    pfam12231
    Location:29 → 361
    Rif1_N; Rap1-interacting factor 1 N terminal

  5. XM_036995885.1 → XP_036851780.1  telomere-associated protein RIF1 isoform X2

    Conserved Domains (3) summary
    PTZ00233
    Location:1497 → 1669
    PTZ00233; variable surface protein Vir18; Provisional
    cd14267
    Location:2315 → 2362
    Rif1_CTD_C-II_like; Saccharomyces cerevisiae Rap1-interacting factor 1 CTD domain, metazoan Rif1 C-II domains and related domains
    pfam12231
    Location:29 → 361
    Rif1_N; Rap1-interacting factor 1 N terminal

  6. XM_036995883.1 → XP_036851778.1  telomere-associated protein RIF1 isoform X1

    Conserved Domains (3) summary
    PTZ00233
    Location:1497 → 1669
    PTZ00233; variable surface protein Vir18; Provisional
    cd14267
    Location:2315 → 2362
    Rif1_CTD_C-II_like; Saccharomyces cerevisiae Rap1-interacting factor 1 CTD domain, metazoan Rif1 C-II domains and related domains
    pfam12231
    Location:29 → 361
    Rif1_N; Rap1-interacting factor 1 N terminal

  7. XM_036995882.1 → XP_036851777.1  telomere-associated protein RIF1 isoform X1

    Conserved Domains (3) summary
    PTZ00233
    Location:1497 → 1669
    PTZ00233; variable surface protein Vir18; Provisional
    cd14267
    Location:2315 → 2362
    Rif1_CTD_C-II_like; Saccharomyces cerevisiae Rap1-interacting factor 1 CTD domain, metazoan Rif1 C-II domains and related domains
    pfam12231
    Location:29 → 361
    Rif1_N; Rap1-interacting factor 1 N terminal

  8. XM_036995887.1 → XP_036851782.1  telomere-associated protein RIF1 isoform X4

    Conserved Domains (3) summary
    PTZ00233
    Location:1489 → 1661
    PTZ00233; variable surface protein Vir18; Provisional
    cd14267
    Location:2307 → 2354
    Rif1_CTD_C-II_like; Saccharomyces cerevisiae Rap1-interacting factor 1 CTD domain, metazoan Rif1 C-II domains and related domains
    pfam12231
    Location:29 → 361
    Rif1_N; Rap1-interacting factor 1 N terminal

  9. XM_036995886.1 → XP_036851781.1  telomere-associated protein RIF1 isoform X3

    Conserved Domains (3) summary
    PTZ00233
    Location:1496 → 1668
    PTZ00233; variable surface protein Vir18; Provisional
    cd14267
    Location:2314 → 2361
    Rif1_CTD_C-II_like; Saccharomyces cerevisiae Rap1-interacting factor 1 CTD domain, metazoan Rif1 C-II domains and related domains
    pfam12231
    Location:29 → 361
    Rif1_N; Rap1-interacting factor 1 N terminal
Nucleotide Protein
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