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VIPAS39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog [ Manis javanica (Malayan pangolin) ]

Gene ID: 108391776, updated on 14-Mar-2024

Summary

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Gene symbol
VIPAS39
Gene description
VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
Gene type
protein coding
RefSeq status
MODEL
Organism
Manis javanica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Pholidota; Manidae; Manis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
101 current YNU_ManJav_2.0 (GCF_014570535.1) Unplaced Scaffold NW_023435897.1 (4428251..4457077)
100 previous assembly ManJav1.0 (GCF_001685135.1) Unplaced Scaffold NW_016529565.1 (27115..56962)

NW_023435897.1Genomic Context describing neighboring genes Neighboring gene serine palmitoyltransferase long chain base subunit 2 Neighboring gene isthmin 2 Neighboring gene activator of HSP90 ATPase activity 1 Neighboring gene NADP dependent oxidoreductase domain containing 1 Neighboring gene sterile alpha motif domain containing 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vacuolar transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spermatogenesis-defective protein 39 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manis javanica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference YNU_ManJav_2.0 Primary Assembly

Genomic

  1. NW_023435897.1 Reference YNU_ManJav_2.0 Primary Assembly

    Range
    4428251..4457077
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017651542.2 → XP_017507031.2  spermatogenesis-defective protein 39 homolog isoform X3

  2. XM_017651543.2 → XP_017507032.2  spermatogenesis-defective protein 39 homolog isoform X1

  3. XM_017651541.2 → XP_017507030.2  spermatogenesis-defective protein 39 homolog isoform X2

  4. XM_017651544.2 → XP_017507033.2  spermatogenesis-defective protein 39 homolog isoform X3

RNA

  1. XR_005061856.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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