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TFAP2B transcription factor AP-2 beta [ Manis javanica (Malayan pangolin) ]

Gene ID: 108389032, updated on 14-Mar-2024

Summary

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Gene symbol
TFAP2B
Gene description
transcription factor AP-2 beta
Gene type
protein coding
RefSeq status
MODEL
Organism
Manis javanica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Pholidota; Manidae; Manis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current YNU_ManJav_2.0 (GCF_014570535.1) Unplaced Scaffold NW_023436233.1 (19624890..19652647, complement)
100 previous assembly ManJav1.0 (GCF_001685135.1) Unplaced Scaffold NW_016590971.1 (1611..29406)

NW_023436233.1Genomic Context describing neighboring genes Neighboring gene PKHD1 ciliary IPT domain containing fibrocystin/polyductin Neighboring gene 40S ribosomal protein S27-like Neighboring gene U6 spliceosomal RNA Neighboring gene transcription factor AP-2 delta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell population proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor AP-2-beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manis javanica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference YNU_ManJav_2.0 Primary Assembly

Genomic

  1. NW_023436233.1 Reference YNU_ManJav_2.0 Primary Assembly

    Range
    19624890..19652647 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037003046.1 → XP_036858941.1  transcription factor AP-2-beta isoform X3

    Conserved Domains (1) summary
    pfam03299
    Location:230 → 424
    TF_AP-2; Transcription factor AP-2

  2. XM_037003047.1 → XP_036858942.1  transcription factor AP-2-beta isoform X5

    Conserved Domains (1) summary
    pfam03299
    Location:212 → 406
    TF_AP-2; Transcription factor AP-2

  3. XM_037003048.1 → XP_036858943.1  transcription factor AP-2-beta isoform X5

    Conserved Domains (1) summary
    pfam03299
    Location:212 → 406
    TF_AP-2; Transcription factor AP-2

  4. XM_037003045.1 → XP_036858940.1  transcription factor AP-2-beta isoform X1

    Conserved Domains (1) summary
    pfam03299
    Location:239 → 433
    TF_AP-2; Transcription factor AP-2

  5. XM_017647595.2 → XP_017503084.1  transcription factor AP-2-beta isoform X2

    Conserved Domains (1) summary
    pfam03299
    Location:239 → 433
    TF_AP-2; Transcription factor AP-2

  6. XM_017647596.2 → XP_017503085.1  transcription factor AP-2-beta isoform X4

    Conserved Domains (1) summary
    pfam03299
    Location:230 → 424
    TF_AP-2; Transcription factor AP-2
Nucleotide Protein
Heading Accession and Version

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