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ATG16L1 autophagy related 16 like 1 [ Cebus imitator (Panamanian white-faced capuchin) ]

Gene ID: 108310631, updated on 14-Mar-2024

Summary

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Gene symbol
ATG16L1
Gene description
autophagy related 16 like 1
See related
Ensembl:ENSCCAG00000007793
Gene type
protein coding
RefSeq status
MODEL
Organism
Cebus imitator
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Cebinae; Cebus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
101 current Cebus_imitator-1.0 (GCF_001604975.1) Unplaced Scaffold NW_016107421.1 (421757..460664)

NW_016107421.1Genomic Context describing neighboring genes Neighboring gene neuraminidase 2 Neighboring gene inositol polyphosphate-5-phosphatase D Neighboring gene small Cajal body-specific RNA 6 Neighboring gene small Cajal body-specific RNA 6 Neighboring gene S-antigen visual arrestin Neighboring gene 60S ribosomal protein L12-like Neighboring gene diacylglycerol kinase delta

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_016107421 Unplaced Scaffold Reference Cebus_imitator-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative stranded viral RNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in autophagosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
autophagy-related protein 16-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cebus imitator Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cebus_imitator-1.0

Genomic

  1. NW_016107421.1 Reference Cebus_imitator-1.0

    Range
    421757..460664
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017537677.1 → XP_017393166.1  autophagy-related protein 16-1 isoform X1

    UniProtKB/TrEMBL
    A0A2K5PCI6, A0A2K5PCM4
    Related
    ENSCCAP00000001350.1, ENSCCAT00000009331.1
    Conserved Domains (4) summary
    COG2319
    Location:272 → 390
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:332 → 622
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:344 → 381
    7WD40; WD40 repeat [structural motif]
    pfam08614
    Location:31 → 206
    ATG16; Autophagy protein 16 (ATG16)

  2. XM_017537679.1 → XP_017393168.1  autophagy-related protein 16-1 isoform X2

    UniProtKB/TrEMBL
    A0A2K5PCJ9, A0A2K5PCM4
    Related
    ENSCCAP00000001363.1, ENSCCAT00000009375.1
    Conserved Domains (3) summary
    cd00200
    Location:315 → 605
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:327 → 364
    7WD40; WD40 repeat [structural motif]
    pfam08614
    Location:31 → 206
    ATG16; Autophagy protein 16 (ATG16)

  3. XM_017537683.1 → XP_017393172.1  autophagy-related protein 16-1 isoform X5

    UniProtKB/TrEMBL
    A0A2K5PCL2, A0A2K5PCM4
    Related
    ENSCCAP00000001367.1, ENSCCAT00000009402.1
    Conserved Domains (3) summary
    cd00200
    Location:296 → 586
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:308 → 345
    7WD40; WD40 repeat [structural motif]
    pfam08614
    Location:31 → 206
    ATG16; Autophagy protein 16 (ATG16)

  4. XM_017537680.1 → XP_017393169.1  autophagy-related protein 16-1 isoform X3

    UniProtKB/TrEMBL
    A0A2K5PCM4

  5. XM_017537681.2 → XP_017393170.1  autophagy-related protein 16-1 isoform X4

    UniProtKB/TrEMBL
    A0A2K5PCM4
    Conserved Domains (4) summary
    COG2319
    Location:243 → 361
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:303 → 593
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:315 → 352
    7WD40; WD40 repeat [structural motif]
    pfam08614
    Location:11 → 177
    ATG16; Autophagy protein 16 (ATG16)
Nucleotide Protein
Heading Accession and Version

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