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SHROOM3 shroom family member 3 [ Cebus imitator (Panamanian white-faced capuchin) ]

Gene ID: 108293415, updated on 14-Mar-2024

Summary

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Gene symbol
SHROOM3
Gene description
shroom family member 3
See related
Ensembl:ENSCCAG00000023135
Gene type
protein coding
RefSeq status
MODEL
Organism
Cebus imitator
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Cebinae; Cebus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
101 current Cebus_imitator-1.0 (GCF_001604975.1) Unplaced Scaffold NW_016107852.1 (438180..817214, complement)

NW_016107852.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L26-like Neighboring gene sosondowah ankyrin repeat domain family member B Neighboring gene ATP synthase subunit ATP5MPL, mitochondrial-like Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3-like Neighboring gene small ubiquitin-related modifier 2-like Neighboring gene heterogeneous nuclear ribonucleoproteins C1/C2-like Neighboring gene 40S ribosomal protein S24-like Neighboring gene small nucleolar RNA SNORD50 Neighboring gene coiled-coil domain containing 158 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_016107852 Unplaced Scaffold Reference Cebus_imitator-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in apical junction complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in apical plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cortical actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein Shroom3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cebus imitator Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cebus_imitator-1.0

Genomic

  1. NW_016107852.1 Reference Cebus_imitator-1.0

    Range
    438180..817214 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017514760.2 → XP_017370249.1  protein Shroom3 isoform X1

    UniProtKB/TrEMBL
    A0A2K5Q4D8

  2. XM_017514761.2 → XP_017370250.1  protein Shroom3 isoform X1

    UniProtKB/TrEMBL
    A0A2K5Q4D8
    Related
    ENSCCAP00000010761.1, ENSCCAT00000028158.1

  3. XM_037733554.1 → XP_037589482.1  protein Shroom3 isoform X3

    UniProtKB/TrEMBL
    A0A2K5Q4D8
    Conserved Domains (2) summary
    pfam08687
    Location:1500 → 1784
    ASD2; Apx/Shroom domain ASD2
    pfam08688
    Location:708 → 886
    ASD1; Apx/Shroom domain ASD1

  4. XM_017514763.2 → XP_017370252.1  protein Shroom3 isoform X3

    UniProtKB/TrEMBL
    A0A2K5Q4D8
    Conserved Domains (2) summary
    pfam08687
    Location:1500 → 1784
    ASD2; Apx/Shroom domain ASD2
    pfam08688
    Location:708 → 886
    ASD1; Apx/Shroom domain ASD1

  5. XM_037733553.1 → XP_037589481.1  protein Shroom3 isoform X2

    UniProtKB/TrEMBL
    A0A2K5Q4D8
    Conserved Domains (2) summary
    pfam08687
    Location:1595 → 1879
    ASD2; Apx/Shroom domain ASD2
    pfam08688
    Location:803 → 981
    ASD1; Apx/Shroom domain ASD1

  6. XM_017514764.2 → XP_017370253.1  protein Shroom3 isoform X3

    UniProtKB/TrEMBL
    A0A2K5Q4D8
    Conserved Domains (2) summary
    pfam08687
    Location:1500 → 1784
    ASD2; Apx/Shroom domain ASD2
    pfam08688
    Location:708 → 886
    ASD1; Apx/Shroom domain ASD1
Nucleotide Protein
Heading Accession and Version

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