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PTPRB protein tyrosine phosphatase receptor type B [ Cebus imitator (Panamanian white-faced capuchin) ]

Gene ID: 108289758, updated on 14-Mar-2024

Summary

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Gene symbol
PTPRB
Gene description
protein tyrosine phosphatase receptor type B
See related
Ensembl:ENSCCAG00000028646
Gene type
protein coding
RefSeq status
MODEL
Organism
Cebus imitator
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Cebinae; Cebus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
35
Annotation release Status Assembly Chr Location
101 current Cebus_imitator-1.0 (GCF_001604975.1) Unplaced Scaffold NW_016107729.1 (1589719..1712089, complement)

NW_016107729.1Genomic Context describing neighboring genes Neighboring gene CCR4-NOT transcription complex subunit 2 Neighboring gene potassium calcium-activated channel subfamily M regulatory beta subunit 4 Neighboring gene uncharacterized LOC108289759 Neighboring gene fumarylacetoacetate hydrolase domain-containing protein 2B-like Neighboring gene protein tyrosine phosphatase receptor type R

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_016107729 Unplaced Scaffold Reference Cebus_imitator-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
receptor-type tyrosine-protein phosphatase beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cebus imitator Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cebus_imitator-1.0

Genomic

  1. NW_016107729.1 Reference Cebus_imitator-1.0

    Range
    1589719..1712089 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017509298.2 → XP_017364787.1  receptor-type tyrosine-protein phosphatase beta isoform X3

    UniProtKB/TrEMBL
    A0A2K5R1E2, A0A2K5R1F1
    Related
    ENSCCAP00000021954.1, ENSCCAT00000039449.1

  2. XM_017509302.2 → XP_017364791.1  receptor-type tyrosine-protein phosphatase beta isoform X5

    UniProtKB/TrEMBL
    A0A2K5R1B1, A0A2K5R1F8
    Related
    ENSCCAP00000021927.1, ENSCCAT00000039422.1

  3. XM_037731614.1 → XP_037587542.1  receptor-type tyrosine-protein phosphatase beta isoform X2

    UniProtKB/TrEMBL
    A0A2K5R1F1
    Conserved Domains (5) summary
    cd00063
    Location:508 → 583
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd14617
    Location:1950 → 2177
    R-PTPc-B; catalytic domain of receptor-type tyrosine-protein phosphatase B
    pfam00041
    Location:1481 → 1563
    fn3; Fibronectin type III domain
    pfam00652
    Location:21 → 92
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    pfam18861
    Location:1692 → 1862
    PTP_tm; Transmembrane domain of protein tyrosine phosphatase, receptor type J

  4. XM_017509297.2 → XP_017364786.1  receptor-type tyrosine-protein phosphatase beta isoform X1

    UniProtKB/TrEMBL
    A0A2K5R1F1
    Related
    ENSCCAP00000021968.1, ENSCCAT00000039463.1

  5. XM_017509301.2 → XP_017364790.1  receptor-type tyrosine-protein phosphatase beta isoform X4

    UniProtKB/TrEMBL
    A0A2K5R1F8
    Related
    ENSCCAP00000021976.1, ENSCCAT00000039471.1
Nucleotide Protein
Heading Accession and Version

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