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LOC108280829 zinc finger protein 236 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108280829, updated on 20-Aug-2024

Summary

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Gene symbol
LOC108280829
Gene description
zinc finger protein 236
See related
EnsemblRapid:ENSIPUG00020004205
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
znf236
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Genomic context

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Location:
chromosome: 20
Exon count:
33
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 20 NC_030435.2 (4606325..4640302, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 20 NC_030435.1 (4414806..4447964, complement)

Chromosome 20 - NC_030435.2Genomic Context describing neighboring genes Neighboring gene galanin receptor type 1 Neighboring gene myelin basic protein b Neighboring gene teashirt homolog 1 Neighboring gene prostaglandin reductase-3 Neighboring gene uncharacterized LOC128628811

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article
  2. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 236

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030435.2 Reference Coco_2.0 Primary Assembly

    Range
    4606325..4640302 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017496264.3 → XP_017351753.1  zinc finger protein 236 isoform X2

    UniProtKB/TrEMBL
    A0A2D0TA51

  2. XM_017496262.3 → XP_017351751.1  zinc finger protein 236 isoform X1

    UniProtKB/TrEMBL
    A0A2D0TA46
    Related
    ENSIPUP00020006601.1, ENSIPUT00020008399.1

  3. XM_017496265.3 → XP_017351754.1  zinc finger protein 236 isoform X3

    UniProtKB/TrEMBL
    A0A2D0TA53
    Related
    ENSIPUP00020006597.1, ENSIPUT00020008395.1
Nucleotide Protein
Heading Accession and Version

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