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pgpep1 pyroglutamyl-peptidase I [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108280548, updated on 12-Sep-2024

Summary

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Gene symbol
pgpep1
Gene description
pyroglutamyl-peptidase I
See related
EnsemblRapid:ENSIPUG00020031850
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 20
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 20 NC_030435.2 (20182043..20188442, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 20 NC_030435.1 (17945476..17951917, complement)

Chromosome 20 - NC_030435.2Genomic Context describing neighboring genes Neighboring gene homer protein homolog 3 Neighboring gene UPF1 RNA helicase and ATPase Neighboring gene uncharacterized si:ch211-178n15.1 Neighboring gene JunD proto-oncogene, AP-1 transcription factor subunit

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyroglutamyl-peptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pyroglutamyl-peptidase 1
Names
Pyroglutamyl-peptidase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030435.2 Reference Coco_2.0 Primary Assembly

    Range
    20182043..20188442 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017495641.3 → XP_017351130.1  pyroglutamyl-peptidase 1 isoform X2

    UniProtKB/TrEMBL
    A0A2D0T8Y9

  2. XM_017495640.3 → XP_017351129.1  pyroglutamyl-peptidase 1 isoform X1

    UniProtKB/TrEMBL
    W5UJX4
    Related
    ENSIPUP00020058265.1, ENSIPUT00020076650.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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