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vldlr very low density lipoprotein receptor [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108277138, updated on 20-Aug-2024

Summary

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Gene symbol
vldlr
Gene description
very low density lipoprotein receptor
See related
EnsemblRapid:ENSIPUG00020009132
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 16
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 16 NC_030431.2 (21091745..21114882)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 16 NC_030431.1 (5647831..5671006, complement)

Chromosome 16 - NC_030431.2Genomic Context describing neighboring genes Neighboring gene secreted phosphoprotein 1 Neighboring gene SH3-domain binding protein 2 Neighboring gene potassium channel, subfamily V, member 2a Neighboring gene pumilio RNA-binding family member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
very low-density lipoprotein receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030431.2 Reference Coco_2.0 Primary Assembly

    Range
    21091745..21114882
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017489563.3 → XP_017345052.1  very low-density lipoprotein receptor isoform X3

    UniProtKB/TrEMBL
    A0A2D0SQS8

  2. XM_017489559.3 → XP_017345048.1  very low-density lipoprotein receptor isoform X1

    UniProtKB/TrEMBL
    A0A2D0SQR9
    Related
    ENSIPUP00020021512.1, ENSIPUT00020025244.1

  3. XM_017489560.3 → XP_017345049.1  very low-density lipoprotein receptor isoform X2

    UniProtKB/TrEMBL
    A0A2D0SQR5
    Related
    ENSIPUP00020021504.1, ENSIPUT00020025236.1
Nucleotide Protein
Heading Accession and Version

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