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ambra1b autophagy/beclin-1 regulator 1b [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108274968, updated on 20-Aug-2024

Summary

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Gene symbol
ambra1b
Gene description
autophagy/beclin-1 regulator 1b
See related
EnsemblRapid:ENSIPUG00020026597
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
ambra1
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 14
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 14 NC_030429.2 (21900372..21920009)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 14 NC_030429.1 (6454533..6474071, complement)

Chromosome 14 - NC_030429.2Genomic Context describing neighboring genes Neighboring gene NADPH oxidase, EF-hand calcium binding domain 5 Neighboring gene glucuronic acid epimerase a Neighboring gene midkine b Neighboring gene diacylglycerol kinase, zeta b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
activating molecule in BECN1-regulated autophagy protein 1B
Names
Activating molecule in BECN1-regulated autophagy protein 1
autophagy and beclin 1 regulator 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030429.2 Reference Coco_2.0 Primary Assembly

    Range
    21900372..21920009
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017485438.3 → XP_017340927.1  activating molecule in BECN1-regulated autophagy protein 1B isoform X1

    UniProtKB/TrEMBL
    W5UG77
    Related
    ENSIPUP00020050600.1, ENSIPUT00020064068.1

  2. XM_053685501.1 → XP_053541476.1  activating molecule in BECN1-regulated autophagy protein 1B isoform X2

    UniProtKB/TrEMBL
    A0A9F7RFZ0
    Related
    ENSIPUP00020050606.1, ENSIPUT00020064074.1

  3. XM_053685500.1 → XP_053541475.1  activating molecule in BECN1-regulated autophagy protein 1B isoform X1

    UniProtKB/TrEMBL
    W5UG77
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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