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ctsba cathepsin Ba [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108269890, updated on 20-Aug-2024

Summary

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Gene symbol
ctsba
Gene description
cathepsin Ba
See related
EnsemblRapid:ENSIPUG00020013175
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
ctsb
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 9
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 9 NC_030424.2 (5219175..5227015, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 9 NC_030424.1 (5469133..5476963)

Chromosome 9 - NC_030424.2Genomic Context describing neighboring genes Neighboring gene prospero homeobox 1a Neighboring gene SET and MYND domain containing 2a Neighboring gene uncharacterized LOC128633617 Neighboring gene protein delta homolog 1 Neighboring gene brain-enriched guanylate kinase-associated protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and mucosal expression analysis of cathepsin B in channel catfish (Ictalurus punctatus) following bacterial challenge. Li C, et al. Fish Shellfish Immunol, 2015 Dec. PMID 26497091
  2. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis involved in protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cathepsin B
NP_001316238.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001329309.1 → NP_001316238.1  cathepsin B precursor

    Status: PROVISIONAL

    Source sequence(s)
    KT780368
    UniProtKB/TrEMBL
    W5UM40
    Related
    ENSIPUP00020026424.1, ENSIPUT00020030886.1
    Conserved Domains (2) summary
    cd02620
    Location:80 → 327
    Peptidase_C1A_CathepsinB; Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an ...
    pfam08127
    Location:25 → 64
    Propeptide_C1; Peptidase family C1 propeptide

RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030424.2 Reference Coco_2.0 Primary Assembly

    Range
    5219175..5227015 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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