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jmjd4 jumonji domain containing 4 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108267893, updated on 20-Aug-2024

Summary

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Gene symbol
jmjd4
Gene description
jumonji domain containing 4
See related
EnsemblRapid:ENSIPUG00020000348
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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See jmjd4 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 7 NC_030422.2 (34419094..34424575)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 7 NC_030422.1 (30573314..30578788, complement)

Chromosome 7 - NC_030422.2Genomic Context describing neighboring genes Neighboring gene wingless-type MMTV integration site family, member 9A Neighboring gene uncharacterized LOC128632960 Neighboring gene synaptosome associated protein 47 Neighboring gene iron-sulfur cluster assembly factor IBA57 Neighboring gene gap junction protein gamma 2 Neighboring gene 5-beta-cholestane-3-alpha,7-alpha-diol 12-alpha-hydroxylase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H4R3 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of translational termination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
2-oxoglutarate and iron-dependent oxygenase JMJD4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030422.2 Reference Coco_2.0 Primary Assembly

    Range
    34419094..34424575
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017472389.3 → XP_017327878.1  2-oxoglutarate and iron-dependent oxygenase JMJD4 isoform X2

    UniProtKB/TrEMBL
    A0A2D0RBG1

  2. XM_017472388.3 → XP_017327877.1  2-oxoglutarate and iron-dependent oxygenase JMJD4 isoform X1

    UniProtKB/TrEMBL
    A0A2D0RBF2
    Related
    ENSIPUP00020000546.1, ENSIPUT00020000737.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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