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mtm1 myotubularin 1 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108267553, updated on 12-Sep-2024

Summary

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Gene symbol
mtm1
Gene description
myotubularin 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 7
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 7 NC_030422.2 (17225916..17259675, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 7 NC_030422.1 (21190276..21224053)

Chromosome 7 - NC_030422.2Genomic Context describing neighboring genes Neighboring gene CD99 molecule-like 2 Neighboring gene myotubularin related protein 1a Neighboring gene mastermind-like domain-containing protein 1 Neighboring gene ubiquitin carboxyl-terminal hydrolase 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrion distribution IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in muscle cell cellular homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myotubularin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030422.2 Reference Coco_2.0 Primary Assembly

    Range
    17225916..17259675 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017471732.3 → XP_017327221.1  myotubularin isoform X1

    UniProtKB/TrEMBL
    A0A2D0RBI1

  2. XM_017471731.3 → XP_017327220.1  myotubularin isoform X1

    UniProtKB/TrEMBL
    A0A2D0RBI1

  3. XM_053681333.1 → XP_053537308.1  myotubularin isoform X3

    UniProtKB/TrEMBL
    A0A9F7RL69

  4. XM_047156432.2 → XP_047012388.1  myotubularin isoform X2

    UniProtKB/TrEMBL
    A0A979EX07
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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