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chn1 chimerin 1 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108266199, updated on 20-Aug-2024

Summary

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Gene symbol
chn1
Gene description
chimerin 1
See related
EnsemblRapid:ENSIPUG00020032910
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 6
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 6 NC_030421.2 (24014553..24061601, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 6 NC_030421.1 (9674497..9720644)

Chromosome 6 - NC_030421.2Genomic Context describing neighboring genes Neighboring gene acetylcholine receptor subunit alpha Neighboring gene WAS/WASL interacting protein family, member 1a Neighboring gene activating transcription factor 2 Neighboring gene ATP synthase membrane subunit c locus 3a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of small GTPase mediated signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N-chimaerin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030421.2 Reference Coco_2.0 Primary Assembly

    Range
    24014553..24061601 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053681041.1 → XP_053537016.1  N-chimaerin

    UniProtKB/TrEMBL
    A0A9F7TLB8
    Related
    ENSIPUP00020059769.1, ENSIPUT00020079155.1
Nucleotide Protein
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Gene LinkOut

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