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siah1 siah E3 ubiquitin protein ligase 1 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108264354, updated on 12-Sep-2024

Summary

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Gene symbol
siah1
Gene description
siah E3 ubiquitin protein ligase 1
See related
EnsemblRapid:ENSIPUG00020011015
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 4 NC_071284.1 (12571166..12597853)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) Y NC_061155.1 (14037739..14064380)

Chromosome 4 - NC_071284.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128629534 Neighboring gene nedd4 binding protein 1 Neighboring gene lon peptidase 2, peroxisomal Neighboring gene interleukin 34 Neighboring gene splicing factor 3b, subunit 3 Neighboring gene small nucleolar RNA SNORD111

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin conjugating enzyme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase Siah1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_071284.1 Reference Coco_2.0 Primary Assembly

    Range
    12571166..12597853
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017465789.3 → XP_017321278.1  E3 ubiquitin-protein ligase Siah1 isoform X2

    UniProtKB/TrEMBL
    A0A2D0QS42
    Conserved Domains (2) summary
    cd16751
    Location:39 → 78
    RING-HC_SIAH1; RING finger, HC subclass, found in seven in absentia homolog 1 (SIAH1) and similar proteins
    pfam03145
    Location:82 → 278
    Sina; Seven in absentia protein family

  2. XM_017465788.3 → XP_017321277.1  E3 ubiquitin-protein ligase Siah1 isoform X2

    UniProtKB/TrEMBL
    A0A2D0QS42
    Conserved Domains (2) summary
    cd16751
    Location:39 → 78
    RING-HC_SIAH1; RING finger, HC subclass, found in seven in absentia homolog 1 (SIAH1) and similar proteins
    pfam03145
    Location:82 → 278
    Sina; Seven in absentia protein family

  3. XM_017465787.3 → XP_017321276.1  E3 ubiquitin-protein ligase Siah1 isoform X1

    UniProtKB/TrEMBL
    A0A2D0QU72
    Related
    ENSIPUP00020021286.1, ENSIPUT00020025018.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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