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mtmr9 myotubularin related protein 9 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108258069, updated on 20-Aug-2024

Summary

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Gene symbol
mtmr9
Gene description
myotubularin related protein 9
See related
EnsemblRapid:ENSIPUG00020019969
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 25
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 25 NC_030440.2 (8102250..8119898, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 25 NC_030440.1 (11647339..11664989)

Chromosome 25 - NC_030440.2Genomic Context describing neighboring genes Neighboring gene PIN2 (TERF1) interacting telomerase inhibitor 1 Neighboring gene L-threonine dehydrogenase Neighboring gene XK, Kell blood group complex subunit-related family, member 6b Neighboring gene uncharacterized LOC108258068 Neighboring gene CCM2 scaffold protein Neighboring gene family with sequence similarity 167 member Ab

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article
  2. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in negative regulation of autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myotubularin-related protein 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030440.2 Reference Coco_2.0 Primary Assembly

    Range
    8102250..8119898 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017456347.3 → XP_017311836.2  myotubularin-related protein 9

    UniProtKB/TrEMBL
    A0A2D0Q0M9, W5ULV3
    Related
    ENSIPUP00020039626.1, ENSIPUT00020048023.1

  2. XM_017456349.3 → XP_017311838.2  myotubularin-related protein 9

    UniProtKB/TrEMBL
    A0A2D0Q0M9, W5ULV3

  3. XM_017456348.3 → XP_017311837.2  myotubularin-related protein 9

    UniProtKB/TrEMBL
    A0A2D0Q0M9, W5ULV3
    Related
    ENSIPUP00020039625.1, ENSIPUT00020048022.1
Nucleotide Protein
Heading Accession and Version

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