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efhc1 EF-hand domain (C-terminal) containing 1 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108257659, updated on 20-Aug-2024

Summary

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Gene symbol
efhc1
Gene description
EF-hand domain (C-terminal) containing 1
See related
EnsemblRapid:ENSIPUG00020017095
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 2
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 2 NC_030417.2 (1743482..1748992, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 2 NC_030417.1 (35475324..35480134)

Chromosome 2 - NC_030417.2Genomic Context describing neighboring genes Neighboring gene prolyl endopeptidase Neighboring gene XK related 5a Neighboring gene translocation associated membrane protein 2 Neighboring gene protein eva-1 homolog C Neighboring gene mitochondrial ribosomal protein L19

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article
  2. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-tubulin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium-dependent cell motility IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic cytokinesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic spindle organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axoneme IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitotic spindle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
EF-hand domain-containing protein 1
Names
EF-hand domain containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030417.2 Reference Coco_2.0 Primary Assembly

    Range
    1743482..1748992 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017455579.3 → XP_017311068.1  EF-hand domain-containing protein 1

    UniProtKB/TrEMBL
    A0A2D0PX37
    Related
    ENSIPUP00020034597.1, ENSIPUT00020040770.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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