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parp10 poly(ADP-ribose) polymerase family member 10 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108257277, updated on 18-Sep-2024

Summary

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Gene symbol
parp10
Gene description
poly(ADP-ribose) polymerase family member 10
See related
EnsemblRapid:ENSIPUG00020005738
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 24
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 24 NC_030439.2 (21070454..21083962)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 24 NC_030439.1 (18693802..18707562)

Chromosome 24 - NC_030439.2Genomic Context describing neighboring genes Neighboring gene sperm associated antigen 1a Neighboring gene uncharacterized LOC128629063 Neighboring gene RNA polymerase II, I and III subunit K Neighboring gene cleavage and polyadenylation specific factor 1 Neighboring gene aarF domain containing kinase 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD+-protein poly-ADP-ribosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein mono-ADP-ribosyltransferase PARP10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030439.2 Reference Coco_2.0 Primary Assembly

    Range
    21070454..21083962
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017454905.2 → XP_017310394.1  protein mono-ADP-ribosyltransferase PARP10

    UniProtKB/TrEMBL
    A0A2D0PV38

  2. XM_047150517.1 → XP_047006473.1  protein mono-ADP-ribosyltransferase PARP10

    UniProtKB/TrEMBL
    A0A2D0PV38

  3. XM_017454904.2 → XP_017310393.1  protein mono-ADP-ribosyltransferase PARP10

    UniProtKB/TrEMBL
    A0A2D0PV38
    Related
    ENSIPUP00020008641.1, ENSIPUT00020011287.1
Nucleotide Protein
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