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vps45 vacuolar protein sorting 45 homolog [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108257077, updated on 20-Aug-2024

Summary

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Gene symbol
vps45
Gene description
vacuolar protein sorting 45 homolog
See related
EnsemblRapid:ENSIPUG00020019284
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 24
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 24 NC_030439.2 (10064486..10075826)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 24 NC_030439.1 (7997666..8008999)

Chromosome 24 - NC_030439.2Genomic Context describing neighboring genes Neighboring gene proteasome 20S subunit beta 4 Neighboring gene pogo transposable element derived with ZNF domain a Neighboring gene retinol-DH_like_SDR_c domain-containing protein Neighboring gene pleckstrin homology domain containing, family O member 1a Neighboring gene acidic (leucine-rich) nuclear phosphoprotein 32 family, member E

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 45

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030439.2 Reference Coco_2.0 Primary Assembly

    Range
    10064486..10075826
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053675520.1 → XP_053531495.1  vacuolar protein sorting-associated protein 45

    UniProtKB/TrEMBL
    A0A9F7R0N8, W5UJL1
    Related
    ENSIPUP00020038550.1, ENSIPUT00020046295.1
Nucleotide Protein
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