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otos otospiralin [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108256635, updated on 24-Aug-2024

Summary

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Gene symbol
otos
Gene description
otospiralin
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 23
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 23 NC_030438.2 (9452196..9453872, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 23 NC_030438.1 (9297778..9299435, complement)

Chromosome 23 - NC_030438.2Genomic Context describing neighboring genes Neighboring gene actinodin1 Neighboring gene COP9 signalosome subunit 9 Neighboring gene apolipoprotein Db Neighboring gene centrosomal protein of 85 kDa-like Neighboring gene myoneurin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in sensory perception of sound IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
otospiralin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030438.2 Reference Coco_2.0 Primary Assembly

    Range
    9452196..9453872 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017453699.3 → XP_017309188.1  otospiralin

    UniProtKB/TrEMBL
    A0A2D0PRJ1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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