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sema6d semaphorin 6D [ Kryptolebias marmoratus (mangrove rivulus) ]

Gene ID: 108251022, updated on 10-Apr-2024

Summary

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Gene symbol
sema6d
Gene description
semaphorin 6D
See related
EnsemblRapid:ENSKMAG00010009524
Gene type
protein coding
RefSeq status
MODEL
Organism
Kryptolebias marmoratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Kryptolebias
Also known as
sema6dl
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG15
Exon count:
21
Annotation release Status Assembly LG Location
102 current ASM164957v2 (GCF_001649575.2) LG15 NC_051444.1 (750179..776522, complement)
101 previous assembly ASM164957v1 (GCF_001649575.1) Unplaced Scaffold NW_016094998.1 (37545..63845)

Linkage Group LG15 - NC_051444.1Genomic Context describing neighboring genes Neighboring gene RING finger protein 148 Neighboring gene solute carrier family 24 member 5 Neighboring gene translation initiation factor IF-2-like Neighboring gene uncharacterized LOC119617730 Neighboring gene extensin-1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D, like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Kryptolebias marmoratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM164957v2 Primary Assembly

Genomic

  1. NC_051444.1 Reference ASM164957v2 Primary Assembly

    Range
    750179..776522 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017441171.3 → XP_017296660.1  sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D, like isoform X3

    UniProtKB/TrEMBL
    A0A3Q2ZZW7, A0A3Q3F607
    Related
    ENSKMAP00010020743.1, ENSKMAT00010021587.1

  2. XM_017441170.3 → XP_017296659.1  sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D, like isoform X2

    UniProtKB/TrEMBL
    A0A3Q2ZZR4, A0A3Q2ZZW7
    Related
    ENSKMAP00010020735.1, ENSKMAT00010021578.1

  3. XM_017441168.3 → XP_017296657.1  sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D, like isoform X1

    UniProtKB/TrEMBL
    A0A3Q2ZYC1, A0A3Q2ZZW7
    Related
    ENSKMAP00010020709.1, ENSKMAT00010021543.1

  4. XM_017441169.3 → XP_017296658.1  sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D, like isoform X1

    UniProtKB/TrEMBL
    A0A3Q2ZYC1, A0A3Q2ZZW7
Nucleotide Protein
Heading Accession and Version

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