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rorc RAR-related orphan receptor C [ Kryptolebias marmoratus (mangrove rivulus) ]

Gene ID: 108241160, updated on 10-Apr-2024

Summary

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Gene symbol
rorc
Gene description
RAR-related orphan receptor C
See related
EnsemblRapid:ENSKMAG00010004289
Gene type
protein coding
RefSeq status
MODEL
Organism
Kryptolebias marmoratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Kryptolebias
Orthologs
zebrafish all
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Genomic context

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See rorc in Genome Data Viewer
Location:
chromosome: LG16
Exon count:
14
Annotation release Status Assembly LG Location
102 current ASM164957v2 (GCF_001649575.2) LG16 NC_051445.1 (12214470..12239512, complement)
101 previous assembly ASM164957v1 (GCF_001649575.1) Unplaced Scaffold NW_016094321.1 (1124390..1147265, complement)

Linkage Group LG16 - NC_051445.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol 4-phosphate 5-kinase type-1 alpha Neighboring gene extracellular matrix protein 1-like Neighboring gene uncharacterized LOC108241059 Neighboring gene thioesterase superfamily member 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear receptor ROR-alpha A
Names
nuclear receptor ROR-beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Kryptolebias marmoratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM164957v2 Primary Assembly

Genomic

  1. NC_051445.1 Reference ASM164957v2 Primary Assembly

    Range
    12214470..12239512 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017425139.3 → XP_017280628.1  nuclear receptor ROR-alpha A isoform X1

    UniProtKB/TrEMBL
    A0A3Q3A0M4
    Related
    ENSKMAP00010008710.1, ENSKMAT00010009120.1

  2. XM_017425140.3 → XP_017280629.1  nuclear receptor ROR-alpha A isoform X2

    UniProtKB/TrEMBL
    A0A3Q2ZMU3
    Related
    ENSKMAP00010008700.1, ENSKMAT00010009106.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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