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ccdc160 coiled-coil domain containing 160 [ Danio rerio (zebrafish) ]

Gene ID: 108192093, updated on 12-Sep-2024

Summary

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Official Symbol
ccdc160provided by ZNC
Official Full Name
coiled-coil domain containing 160provided by ZNC
Primary source
ZFIN:ZDB-GENE-130515-1
See related
Ensembl:ENSDARG00000075492 AllianceGenome:ZFIN:ZDB-GENE-130515-1
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Orthologous to human CCDC160 (coiled-coil domain containing 160). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See ccdc160 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (31474093..31474998)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (31133779..31134684)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene microRNA 20b Neighboring gene microRNA 18c Neighboring gene calcium binding protein 39, like 1 Neighboring gene PHD finger protein 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
coiled-coil domain-containing protein 160
Names
coiled-coil domain-containing protein 160 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    31474093..31474998
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017359058.1 → XP_017214547.1  coiled-coil domain-containing protein 160 isoform X1

    UniProtKB/TrEMBL
    A0A8M6Z243
    Related
    ENSDARP00000142611.1, ENSDART00000173088.2

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394915.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    30197..33407
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021472827.1 → XP_021328502.1  coiled-coil domain-containing protein 160 isoform X2

    UniProtKB/TrEMBL
    A0A8M9PBQ3
    Conserved Domains (1) summary
    cl25732
    Location:114 → 274
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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