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SMAC_00230 hypothetical protein [ Sordaria macrospora k-hell ]

Gene ID: 10809276, updated on 17-May-2024

Summary

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Gene symbol
SMAC_00230
Gene description
hypothetical protein
Primary source
FungiDB:SMAC_00230
Locus tag
SMAC_00230
See related
VEuPathDB:SMAC_00230
Gene type
protein coding
RNA name
uncharacterized protein
RefSeq status
PROVISIONAL
Organism
Sordaria macrospora k-hell (strain: k-hell)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; Sordaria
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Genomic context

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See SMAC_00230 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
2

NW_020185340.1Genomic Context describing neighboring genes Neighboring gene mitochondrial 54S ribosomal protein YmL44 Neighboring gene hypothetical protein Neighboring gene carboxylesterase-mitochondrial 37S ribosomal protein YmS2 Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020185340.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of a 40 Mb eukaryotic genome from short sequence reads: Sordaria macrospora, a model organism for fungal morphogenesis. Nowrousian M, et al. PLoS Genet, 2010 Apr 8. PMID 20386741, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA dihydrouridine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA dihydrouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_020185340.1 Reference assembly

    Range
    998868..1000316
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003351640.1 → XP_003351688.1  uncharacterized protein SMAC_00230 [Sordaria macrospora k-hell]

    See identical proteins and their annotated locations for XP_003351688.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8S9A400, F7VKI7
    Conserved Domains (1) summary
    cd02801
    Location:36 → 290
    DUS_like_FMN; Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also ...
Nucleotide Protein
Heading Accession and Version

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