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LOC107986524 uncharacterized LOC107986524 [ Homo sapiens (human) ]

Gene ID: 107986524, updated on 10-Oct-2023

Summary

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Gene symbol
LOC107986524
Gene description
uncharacterized LOC107986524
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 2.1), heart (RPKM 1.2) and 23 other tissues See more
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Genomic context

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Location:
6q22.31
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (118565681..118582298)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (119750832..119767680)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene centrosomal protein 85 like Neighboring gene bromodomain containing 7 pseudogene 3 Neighboring gene VISTA enhancer hs2188 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:118894930-118896129 Neighboring gene phospholamban Neighboring gene SSX family pseudogene 10 Neighboring gene MPRA-validated peak6062 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:118951260-118951854 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:118951855-118952449 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17501 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17502 Neighboring gene uncharacterized LOC124901388

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    118565681..118582298
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007059725.1 RNA Sequence

  2. XR_002956384.2 RNA Sequence

  3. XR_001743819.3 RNA Sequence

  4. XR_007059724.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    119750832..119767680
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007077064.1 RNA Sequence

  2. XR_007077063.1 RNA Sequence

  3. XR_007077065.1 RNA Sequence

  4. XR_007077062.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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