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LOC107776186 protein BASIC PENTACYSTEINE6-like [ Nicotiana tabacum (common tobacco) ]

Gene ID: 107776186, updated on 28-Dec-2023

Summary

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Gene symbol
LOC107776186
Gene description
protein BASIC PENTACYSTEINE6-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Nicotiana tabacum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Ntab-TN90 (GCF_000715135.1) Unplaced Scaffold NW_015901507.1 (44756..49461, complement)

NW_015901507.1Genomic Context describing neighboring genes Neighboring gene protein RCC2 homolog Neighboring gene basic leucine zipper 19-like Neighboring gene peroxidase 60-like Neighboring gene germin-like protein 9-3 Neighboring gene F-box protein At5g39450-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015901507.1 Unplaced Scaffold Reference Ntab-TN90 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in response to ethylene IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein BASIC PENTACYSTEINE6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nicotiana tabacum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ntab-TN90 Primary Assembly

Genomic

  1. NW_015901507.1 Reference Ntab-TN90 Primary Assembly

    Range
    44756..49461 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016596045.1 → XP_016451531.1  protein BASIC PENTACYSTEINE6-like

    UniProtKB/TrEMBL
    A0A076L2D6
    Conserved Domains (1) summary
    pfam06217
    Location:1 → 327
    GAGA_bind; GAGA binding protein-like family

  2. XM_016596044.1 → XP_016451530.1  protein BASIC PENTACYSTEINE6-like

    UniProtKB/TrEMBL
    A0A076L2D6
    Conserved Domains (1) summary
    pfam06217
    Location:1 → 327
    GAGA_bind; GAGA binding protein-like family

  3. XM_016596041.1 → XP_016451527.1  protein BASIC PENTACYSTEINE6-like

    UniProtKB/TrEMBL
    A0A076L2D6
    Conserved Domains (1) summary
    pfam06217
    Location:1 → 327
    GAGA_bind; GAGA binding protein-like family

  4. XM_016596042.1 → XP_016451528.1  protein BASIC PENTACYSTEINE6-like

    UniProtKB/TrEMBL
    A0A076L2D6
    Conserved Domains (1) summary
    pfam06217
    Location:1 → 327
    GAGA_bind; GAGA binding protein-like family
Nucleotide Protein
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