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snx16 sorting nexin 16 [ Sinocyclocheilus rhinocerous ]

Gene ID: 107756864, updated on 14-Mar-2024

Summary

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Gene symbol
snx16
Gene description
sorting nexin 16
See related
Ensembl:ENSSRHG00000046903
Gene type
protein coding
RefSeq status
MODEL
Organism
Sinocyclocheilus rhinocerous
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Sinocyclocheilus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current SAMN03320098_v1.1 (GCF_001515625.1) Unplaced Scaffold NW_015642844.1 (152297..159134)

NW_015642844.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107756854 Neighboring gene uncharacterized LOC107756868 Neighboring gene uncharacterized LOC107756867 Neighboring gene NEDD4-like E3 ubiquitin-protein ligase WWP1 Neighboring gene regulator of microtubule dynamics protein 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015642844.1 Unplaced Scaffold Reference SAMN03320098_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in early endosome to late endosome transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosome to lysosome transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein targeting to lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in early endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extrinsic component of endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sorting nexin-16

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sinocyclocheilus rhinocerous Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SAMN03320098_v1.1 Primary Assembly

Genomic

  1. NW_015642844.1 Reference SAMN03320098_v1.1 Primary Assembly

    Range
    152297..159134
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016574180.1 → XP_016429666.1  sorting nexin-16 isoform X2

    UniProtKB/TrEMBL
    A0A673N462
    Related
    ENSSRHP00000095377.1, ENSSRHT00000097965.1

  2. XM_016574177.1 → XP_016429663.1  sorting nexin-16 isoform X1

    UniProtKB/TrEMBL
    A0A673MY66, A0A673N462

  3. XM_016574178.1 → XP_016429664.1  sorting nexin-16 isoform X1

    UniProtKB/TrEMBL
    A0A673MY66, A0A673N462
    Related
    ENSSRHP00000095378.1, ENSSRHT00000097966.1

  4. XM_016574176.1 → XP_016429662.1  sorting nexin-16 isoform X1

    UniProtKB/TrEMBL
    A0A673MY66, A0A673N462

  5. XM_016574179.1 → XP_016429665.1  sorting nexin-16 isoform X1

    UniProtKB/TrEMBL
    A0A673MY66, A0A673N462

RNA

  1. XR_001641870.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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