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WHRN whirlin [ Miniopterus natalensis ]

Gene ID: 107535448, updated on 30-Mar-2024

Summary

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Gene symbol
WHRN
Gene description
whirlin
Gene type
protein coding
RefSeq status
MODEL
Organism
Miniopterus natalensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Miniopteridae; Miniopterus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current Mnat.v1 (GCF_001595765.1) Unplaced Scaffold NW_015504492.1 (1524440..1591266)

NW_015504492.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 268 Neighboring gene ATPase H+ transporting V1 subunit G1 Neighboring gene AT-hook transcription factor Neighboring gene orosomucoid 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015504492.1 Unplaced Scaffold Reference Mnat.v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in auditory receptor cell stereocilium organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sensory perception of sound IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in photoreceptor inner segment IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of stereocilia ankle link complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stereocilium tip IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
whirlin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Miniopterus natalensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mnat.v1

Genomic

  1. NW_015504492.1 Reference Mnat.v1

    Range
    1524440..1591266
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016210898.1 → XP_016066384.1  whirlin isoform X1

    Conserved Domains (3) summary
    cd00992
    Location:138 → 215
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd07356
    Location:35 → 112
    HN_L-whirlin_R1_like; first harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains
    cd07357
    Location:419 → 499
    HN_L-whirlin_R2_like; second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains

  2. XM_016210899.1 → XP_016066385.1  whirlin isoform X2

    Conserved Domains (3) summary
    cd00992
    Location:138 → 215
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd07356
    Location:35 → 112
    HN_L-whirlin_R1_like; first harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains
    cd07357
    Location:419 → 499
    HN_L-whirlin_R2_like; second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains

  3. XM_016210900.1 → XP_016066386.1  whirlin isoform X3

    Conserved Domains (3) summary
    cd00992
    Location:138 → 215
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd07356
    Location:35 → 112
    HN_L-whirlin_R1_like; first harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains
    cd07357
    Location:419 → 499
    HN_L-whirlin_R2_like; second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains
Nucleotide Protein
Heading Accession and Version

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