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six6a SIX homeobox 6a [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107392311, updated on 14-Mar-2024

Summary

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Gene symbol
six6a
Gene description
SIX homeobox 6a
See related
Ensembl:ENSNFUG00015018745
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
Also known as
six6
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539918.1 (7742635..7748199)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr16 NC_029664.1 (31332081..31337311, complement)

NW_026539918.1Genomic Context describing neighboring genes Neighboring gene pecanex 4 Neighboring gene dehydrogenase/reductase (SDR family) member 7 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent, 1Aa Neighboring gene SIX homeobox 1a Neighboring gene SIX homeobox 4a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein SIX6a
Names
SIX homeobox 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539918.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    7742635..7748199
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015970046.2 → XP_015825532.1  homeobox protein SIX6a

    UniProtKB/TrEMBL
    A0A8C6P690
    Related
    ENSNFUP00015038867.1
    Conserved Domains (2) summary
    cd00086
    Location:130 → 178
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam16878
    Location:9 → 122
    SIX1_SD; Transcriptional regulator, SIX1, N-terminal SD domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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