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alx3 ALX homeobox 3 [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107390806, updated on 6-Jun-2024

Summary

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Gene symbol
alx3
Gene description
ALX homeobox 3
See related
Ensembl:ENSNFUG00015022679
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539923.1 (16991889..16997343)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr15 NC_029663.1 (18490391..18495920)

NW_026539923.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129164752 Neighboring gene sodium channel and clathrin linker 1 Neighboring gene uncharacterized LOC129164753 Neighboring gene RNA binding motif protein 15 Neighboring gene solute carrier family 16 member 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • BX324132.5

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein aristaless-like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539923.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    16991889..16997343
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015967740.2 → XP_015823226.2  homeobox protein aristaless-like 3

    UniProtKB/TrEMBL
    A0A9D3BIS9
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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