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LOC107389111 tetratricopeptide repeat protein 39B [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107389111, updated on 16-Nov-2023

Summary

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Gene symbol
LOC107389111
Gene description
tetratricopeptide repeat protein 39B
See related
Ensembl:ENSNFUG00015005219
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
Also known as
ttc39b
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Genomic context

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Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539921.1 (14956782..14967555)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr02 NC_029650.1 (16379543..16387506)

NW_026539921.1Genomic Context describing neighboring genes Neighboring gene PC4 and SFRS1 interacting protein 1a Neighboring gene small nuclear RNA activating complex, polypeptide 3 Neighboring gene DnaJ heat shock protein family (Hsp40) member B14 Neighboring gene phospholipase A2, group XIIA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetratricopeptide repeat protein 39B
Names
tetratricopeptide repeat domain 39B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539921.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    14956782..14967555
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015965063.2 → XP_015820549.1  tetratricopeptide repeat protein 39B

    UniProtKB/TrEMBL
    A0A8C6KTH6
    Related
    ENSNFUP00015010795.1
    Conserved Domains (1) summary
    pfam10300
    Location:35 → 491
    DUF3808; Protein of unknown function (DUF3808)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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