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slc11a2 solute carrier family 11 member 2 [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107385674, updated on 3-Apr-2024

Summary

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Gene symbol
slc11a2
Gene description
solute carrier family 11 member 2
See related
Ensembl:ENSNFUG00015008162
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539915.1 (9637539..9665589, complement)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr10 NC_029658.1 (46492903..46521310)

NW_026539915.1Genomic Context describing neighboring genes Neighboring gene signal transducer and activator of transcription 2 Neighboring gene G protein-coupled receptor 84 Neighboring gene serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C Neighboring gene aminopeptidase like 1 Neighboring gene cathepsin Z

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadmium ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables manganese ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in metal ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
natural resistance-associated macrophage protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539915.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    9637539..9665589 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015959731.2 → XP_015815217.1  natural resistance-associated macrophage protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C6LF10, A0A9D3BG29
    Conserved Domains (1) summary
    TIGR01197
    Location:79 → 478
    nramp; NRAMP (natural resistance-associated macrophage protein) metal ion transporters

  2. XM_015959733.2 → XP_015815219.1  natural resistance-associated macrophage protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A1A8B2R0, A0A8C6LF10
    Related
    ENSNFUP00015019346.1
    Conserved Domains (1) summary
    TIGR01197
    Location:62 → 461
    nramp; NRAMP (natural resistance-associated macrophage protein) metal ion transporters

  3. XM_054749440.1 → XP_054605415.1  natural resistance-associated macrophage protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A1A8B2R0

  4. XM_054749442.1 → XP_054605417.1  natural resistance-associated macrophage protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A1A8B2R0

  5. XM_015959734.2 → XP_015815220.1  natural resistance-associated macrophage protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A8C6LDK1, A0A9D3BHT5
    Related
    ENSNFUP00015019507.1
    Conserved Domains (1) summary
    TIGR01197
    Location:61 → 460
    nramp; NRAMP (natural resistance-associated macrophage protein) metal ion transporters

  6. XM_015959732.2 → XP_015815218.1  natural resistance-associated macrophage protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C6LF10, A0A9D2XUJ0
    Conserved Domains (1) summary
    TIGR01197
    Location:79 → 478
    nramp; NRAMP (natural resistance-associated macrophage protein) metal ion transporters
Nucleotide Protein
Heading Accession and Version

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