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eloc elongin C [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107382927, updated on 6-Jun-2024

Summary

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Gene symbol
eloc
Gene description
elongin C
See related
Ensembl:ENSNFUG00015013087
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
Also known as
tceb1
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539928.1 (11334033..11339073)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr08 NC_029656.1 (45310711..45313659, complement)

NW_026539928.1Genomic Context describing neighboring genes Neighboring gene ganglioside induced differentiation associated protein 1 Neighboring gene uncharacterized LOC129167095 Neighboring gene junctophilin 1a Neighboring gene ubiquitin conjugating enzyme E2 Wb Neighboring gene staufen double-stranded RNA binding protein 2 Neighboring gene uncharacterized LOC129167094

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-macromolecule adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of elongin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
elongin-C
Names
transcription elongation factor B subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539928.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    11334033..11339073
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054751130.1 → XP_054607105.1  elongin-C

    UniProtKB/TrEMBL
    A0A1A8U635, A0A8C6M3C7

  2. XM_015955284.2 → XP_015810770.1  elongin-C

    UniProtKB/TrEMBL
    A0A1A8U635, A0A8C6M3C7
    Related
    ENSNFUP00015027014.1
    Conserved Domains (1) summary
    cd18321
    Location:18 → 112
    BTB_POZ_EloC; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Elongin-C (EloC) and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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