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loxl1 lysyl oxidase-like 1 [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107382120, updated on 14-Mar-2024

Summary

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Gene symbol
loxl1
Gene description
lysyl oxidase-like 1
See related
Ensembl:ENSNFUG00015004478
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539934.1 (62761058..62783809)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr07 NC_029655.1 (63148527..63173709)

NW_026539934.1Genomic Context describing neighboring genes Neighboring gene CD276 molecule Neighboring gene inhibitory synaptic factor 1 Neighboring gene secretory carrier-associated membrane protein 5 Neighboring gene immunoglobulin superfamily, DCC subclass, member 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein-lysine 6-oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-lysine oxidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysyl oxidase homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539934.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    62761058..62783809
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015954115.2 → XP_015809601.1  lysyl oxidase homolog 1

    UniProtKB/TrEMBL
    A0A1A7ZI08
    Related
    ENSNFUP00015009197.1
    Conserved Domains (1) summary
    pfam01186
    Location:357 → 556
    Lysyl_oxidase; Lysyl oxidase
Nucleotide Protein
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Gene LinkOut

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