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dhx38 DEAH (Asp-Glu-Ala-His) box polypeptide 38 [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107381354, updated on 14-Mar-2024

Summary

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Gene symbol
dhx38
Gene description
DEAH (Asp-Glu-Ala-His) box polypeptide 38
See related
Ensembl:ENSNFUG00015019266
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539934.1 (18280623..18308517, complement)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr07 NC_029655.1 (21256019..21282291, complement)

NW_026539934.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129153111 Neighboring gene uncharacterized LOC129153112 Neighboring gene cytochrome b5 Neighboring gene uncharacterized LOC107381585

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
Names
DEAH-box helicase 38

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539934.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    18280623..18308517 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015952969.2 → XP_015808455.1  pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16

    UniProtKB/TrEMBL
    A0A1A8B376, A0A9D2Y0Y7
    Conserved Domains (6) summary
    smart00490
    Location:782 → 881
    HELICc; helicase superfamily c-terminal domain
    smart00487
    Location:546 → 733
    DEXDc; DEAD-like helicases superfamily
    smart00847
    Location:950 → 1032
    HA2; Helicase associated domain (HA2) Add an annotation
    cd00046
    Location:571 → 707
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam05285
    Location:26 → 166
    SDA1; SDA1
    pfam07717
    Location:1066 → 1166
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold

  2. XM_015952970.2 → XP_015808456.1  pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16

    UniProtKB/TrEMBL
    A0A1A8B376, A0A9D2Y0Y7
    Conserved Domains (6) summary
    smart00490
    Location:782 → 881
    HELICc; helicase superfamily c-terminal domain
    smart00487
    Location:546 → 733
    DEXDc; DEAD-like helicases superfamily
    smart00847
    Location:950 → 1032
    HA2; Helicase associated domain (HA2) Add an annotation
    cd00046
    Location:571 → 707
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam05285
    Location:26 → 166
    SDA1; SDA1
    pfam07717
    Location:1066 → 1166
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold
Nucleotide Protein
Heading Accession and Version

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