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rhbdf1a rhomboid 5 homolog 1a (Drosophila) [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107378382, updated on 14-Mar-2024

Summary

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Gene symbol
rhbdf1a
Gene description
rhomboid 5 homolog 1a (Drosophila)
See related
Ensembl:ENSNFUG00015007892
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
Also known as
rhbdf1
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539917.1 (2843639..2882937)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr05 NC_029653.1 (3730674..3772057)

NW_026539917.1Genomic Context describing neighboring genes Neighboring gene hemoglobin subunit beta-A Neighboring gene NPR3-like, GATOR1 complex subunit Neighboring gene N-methylpurine DNA glycosylase Neighboring gene arylalkylamine N-acetyltransferase 2 Neighboring gene mahogunin, ring finger 1b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of epidermal growth factor receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
inactive rhomboid protein 1
Names
rhomboid 5 homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539917.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    2843639..2882937
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015948567.2 → XP_015804053.1  inactive rhomboid protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C6LD68, A0A9D2YS44
    Conserved Domains (2) summary
    pfam01694
    Location:686 → 827
    Rhomboid; Rhomboid family
    pfam12595
    Location:130 → 348
    Rhomboid_SP; Rhomboid serine protease

  2. XM_015948569.2 → XP_015804055.1  inactive rhomboid protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C6LD68, A0A9D3BWU0
    Conserved Domains (2) summary
    pfam01694
    Location:685 → 826
    Rhomboid; Rhomboid family
    pfam12595
    Location:129 → 347
    Rhomboid_SP; Rhomboid serine protease

  3. XM_015948570.2 → XP_015804056.1  inactive rhomboid protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A1A7Z8T9, A0A8C6LD68
    Conserved Domains (2) summary
    pfam01694
    Location:650 → 791
    Rhomboid; Rhomboid family
    pfam12595
    Location:94 → 312
    Rhomboid_SP; Rhomboid serine protease

  4. XM_015948568.2 → XP_015804054.1  inactive rhomboid protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C6LD68, A0A9D2YS44
    Conserved Domains (2) summary
    pfam01694
    Location:686 → 827
    Rhomboid; Rhomboid family
    pfam12595
    Location:130 → 348
    Rhomboid_SP; Rhomboid serine protease
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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