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xab2 XPA binding protein 2 [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107378337, updated on 14-Mar-2024

Summary

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Gene symbol
xab2
Gene description
XPA binding protein 2
See related
Ensembl:ENSNFUG00015004487
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
Orthologs
human zebrafish all
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Genomic context

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See xab2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539917.1 (1919225..1930740)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr05 NC_029653.1 (2649552..2661021)

NW_026539917.1Genomic Context describing neighboring genes Neighboring gene myosin heavy chain, fast skeletal muscle Neighboring gene myosin heavy chain, fast skeletal muscle Neighboring gene calmodulin regulated spectrin-associated protein family, member 3 Neighboring gene nuclear receptor subfamily 5, group A, member 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in generation of catalytic spliceosome for first transesterification step IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Prp19 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of post-mRNA release spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-splicing factor SYF1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539917.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    1919225..1930740
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015948482.2 → XP_015803968.1  pre-mRNA-splicing factor SYF1

    UniProtKB/TrEMBL
    A0A1A8VBU3, A0A8C6KVM4
    Related
    ENSNFUP00015009597.1
    Conserved Domains (2) summary
    COG5107
    Location:108 → 627
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
    sd00006
    Location:428 → 456
    TPR; TPR repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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