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Trnaa-cgc transfer RNA alanine (anticodon CGC) [ Acropora digitifera ]

Gene ID: 107325974, updated on 12-Mar-2017

Summary

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Gene symbol
Trnaa-cgc
Gene description
transfer RNA alanine (anticodon CGC)
Gene type
tRNA
RefSeq status
MODEL
Organism
Acropora digitifera
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia; Astrocoeniina; Acroporidae; Acropora
Summary
This record serves to anchor the annotations of this class of tRNAs at multiple locations on the Acropora digitifera genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 90
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Genomic context

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Location:
chromosome: Un
Annotation release Status Assembly Chr Location
100 current Adig_1.1 (GCF_000222465.1) Unplaced Scaffold NW_015441078.1 (226718..226790) , (227284..227356)
100 current Adig_1.1 (GCF_000222465.1) Unplaced Scaffold NW_015441112.1 (358133..358204, complement)
100 current Adig_1.1 (GCF_000222465.1) Unplaced Scaffold NW_015441249.1 (79255..79327, complement)

NW_015441249.1Genomic Context describing neighboring genes Neighboring gene osmotic avoidance abnormal protein 3-like Neighboring gene BET1-like protein Neighboring gene F-box/LRR-repeat protein 14-like Neighboring gene AN1-type zinc finger protein 2B-like Neighboring gene isocitrate dehydrogenase [NADP] cytoplasmic-like

NW_015441112.1Genomic Context describing neighboring genes Neighboring gene bone morphogenetic protein 2-A-like Neighboring gene ATP-binding cassette sub-family B member 10, mitochondrial-like Neighboring gene uncharacterized LOC107334074 Neighboring gene uncharacterized LOC107334076

NW_015441078.1Genomic Context describing neighboring genes Neighboring gene phospholipid phosphatase 5-like Neighboring gene transfer RNA proline (anticodon UGG) Neighboring gene transfer RNA proline (anticodon UGG) Neighboring gene glycoprotein 3-alpha-L-fucosyltransferase A-like Neighboring gene uncharacterized LOC107327375 Neighboring gene coiled-coil domain-containing protein 186-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acropora digitifera Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Adig_1.1 Primary Assembly

Genomic

  1. NW_015441078.1 Reference Adig_1.1 Primary Assembly

    Range
    226718..226790
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference Adig_1.1 Primary Assembly

Genomic

  1. NW_015441078.1 Reference Adig_1.1 Primary Assembly

    Range
    227284..227356
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference Adig_1.1 Primary Assembly

Genomic

  1. NW_015441112.1 Reference Adig_1.1 Primary Assembly

    Range
    358133..358204 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference Adig_1.1 Primary Assembly

Genomic

  1. NW_015441249.1 Reference Adig_1.1 Primary Assembly

    Range
    79255..79327 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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