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SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 [ Coturnix japonica (Japanese quail) ]

Gene ID: 107321286, updated on 14-Mar-2024

Summary

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Gene symbol
SMARCB1
Gene description
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
See related
Ensembl:ENSCJPG00005008552
Gene type
protein coding
RefSeq status
MODEL
Organism
Coturnix japonica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Perdicinae; Coturnix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 15
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Coturnix japonica 2.1 (GCF_001577835.2) 15 NC_029530.1 (7050063..7059691)

Chromosome 15 - NC_029530.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116654132 Neighboring gene uncharacterized LOC107321289 Neighboring gene matrix metallopeptidase 11 Neighboring gene derlin 3 Neighboring gene solute carrier family 2 member 11

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029530.1 Chromosome 15 Reference Coturnix japonica 2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coturnix japonica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coturnix japonica 2.1 Primary Assembly

Genomic

  1. NC_029530.1 Reference Coturnix japonica 2.1 Primary Assembly

    Range
    7050063..7059691
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015878035.2 → XP_015733521.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1

    UniProtKB/TrEMBL
    A0A8C2TD64, A0A8C2Y9F1
    Related
    ENSCJPP00005009769.1, ENSCJPT00005014533.1
    Conserved Domains (2) summary
    pfam04855
    Location:182 → 364
    SNF5; SNF5 / SMARCB1 / INI1
    cd21086
    Location:9 → 108
    WH_NTD_SMARCB1; N-terminal winged helix DNA-binding domain found in SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 (SMARCB1) and similar proteins
Nucleotide Protein
Heading Accession and Version

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