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ACAN aggrecan [ Coturnix japonica (Japanese quail) ]

Gene ID: 107318818, updated on 14-Mar-2024

Summary

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Gene symbol
ACAN
Gene description
aggrecan
See related
Ensembl:ENSCJPG00005020389
Gene type
protein coding
RefSeq status
MODEL
Organism
Coturnix japonica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Perdicinae; Coturnix
Orthologs
human mouse all
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Genomic context

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See ACAN in Genome Data Viewer
Location:
chromosome: 10
Exon count:
18
Annotation release Status Assembly Chr Location
101 current Coturnix japonica 2.1 (GCF_001577835.2) 10 NC_029525.1 (11708437..11750714, complement)

Chromosome 10 - NC_029525.1Genomic Context describing neighboring genes Neighboring gene milk fat globule EGF and factor V/VIII domain containing Neighboring gene hyaluronan and proteoglycan link protein 3 Neighboring gene uncharacterized LOC116653913 Neighboring gene apoptosis enhancing nuclease

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029525.1 Chromosome 10 Reference Coturnix japonica 2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hyaluronic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aggrecan core protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coturnix japonica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coturnix japonica 2.1 Primary Assembly

Genomic

  1. NC_029525.1 Reference Coturnix japonica 2.1 Primary Assembly

    Range
    11708437..11750714 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032446794.1 → XP_032302685.1  aggrecan core protein isoform X2

    Conserved Domains (8) summary
    cd00033
    Location:2003 → 2060
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    cd03588
    Location:1876 → 1999
    CLECT_CSPGs; C-type lectin-like domain (CTLD) of the type found in chondroitin sulfate proteoglycan core proteins
    PHA03307
    Location:770 → 1033
    PHA03307; transcriptional regulator ICP4; Provisional
    cd00054
    Location:1834 → 1870
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd03517
    Location:149 → 243
    Link_domain_CSPGs_modules_1_3; this extracellular link domain is found in the first and third link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan. In addition, it is found in the first link module of three other CSPGs: versican, neurocan, and brevican. ...
    cd03520
    Location:621 → 716
    Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The link domain is a hyaluronan ...
    cd05900
    Location:33 → 151
    Ig_Aggrecan; Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan
    NF033913
    Location:1603 → 1750
    fibronec_FbpA; LPXTG-anchored fibronectin-binding protein FbpA

  2. XM_015873080.2 → XP_015728566.1  aggrecan core protein isoform X1

    UniProtKB/TrEMBL
    A0A8C2UEP9
    Conserved Domains (7) summary
    cd00033
    Location:1965 → 2022
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    cd03588
    Location:1838 → 1961
    CLECT_CSPGs; C-type lectin-like domain (CTLD) of the type found in chondroitin sulfate proteoglycan core proteins
    PHA03307
    Location:770 → 1033
    PHA03307; transcriptional regulator ICP4; Provisional
    cd03517
    Location:149 → 243
    Link_domain_CSPGs_modules_1_3; this extracellular link domain is found in the first and third link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan. In addition, it is found in the first link module of three other CSPGs: versican, neurocan, and brevican. ...
    cd03520
    Location:621 → 716
    Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The link domain is a hyaluronan ...
    pfam05109
    Location:1470 → 1850
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cd05900
    Location:33 → 151
    Ig_Aggrecan; Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

  3. XM_032446793.1 → XP_032302684.1  aggrecan core protein isoform X1

    UniProtKB/TrEMBL
    A0A8C2UEP9
    Conserved Domains (7) summary
    cd00033
    Location:1965 → 2022
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    cd03588
    Location:1838 → 1961
    CLECT_CSPGs; C-type lectin-like domain (CTLD) of the type found in chondroitin sulfate proteoglycan core proteins
    PHA03307
    Location:770 → 1033
    PHA03307; transcriptional regulator ICP4; Provisional
    cd03517
    Location:149 → 243
    Link_domain_CSPGs_modules_1_3; this extracellular link domain is found in the first and third link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan. In addition, it is found in the first link module of three other CSPGs: versican, neurocan, and brevican. ...
    cd03520
    Location:621 → 716
    Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The link domain is a hyaluronan ...
    pfam05109
    Location:1470 → 1850
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cd05900
    Location:33 → 151
    Ig_Aggrecan; Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

  4. XM_032446792.1 → XP_032302683.1  aggrecan core protein isoform X1

    UniProtKB/TrEMBL
    A0A8C2UEP9
    Related
    ENSCJPP00005026133.1, ENSCJPT00005035426.1
    Conserved Domains (7) summary
    cd00033
    Location:1965 → 2022
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    cd03588
    Location:1838 → 1961
    CLECT_CSPGs; C-type lectin-like domain (CTLD) of the type found in chondroitin sulfate proteoglycan core proteins
    PHA03307
    Location:770 → 1033
    PHA03307; transcriptional regulator ICP4; Provisional
    cd03517
    Location:149 → 243
    Link_domain_CSPGs_modules_1_3; this extracellular link domain is found in the first and third link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan. In addition, it is found in the first link module of three other CSPGs: versican, neurocan, and brevican. ...
    cd03520
    Location:621 → 716
    Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The link domain is a hyaluronan ...
    pfam05109
    Location:1470 → 1850
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cd05900
    Location:33 → 151
    Ig_Aggrecan; Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan
Nucleotide Protein
Heading Accession and Version

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